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Gdsfmt

The gdsfmt package offers the efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to. Package 'gdsfmt' was removed from the CRAN repository. Formerly available versions can be obtained from the archive. Archived on for repeated policy violations by the maintainer. This package is now available from Bioconductor only, see. gdsfmt: R Interface to CoreArray Genomic Data Structure (GDS) files. Version: Features. This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with.

The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. It is also allowed to read a GDS file in parallel with multiple R processes supported by the . 10 Feb To install the package gdsfmt, you need a current version (>=) of R. After installing R you can run the following commands from the R command shell to install the package gdsfmt. Install the package from Bioconductor repository: source("") biocLite("gdsfmt"). Install the. CoreArray project is to develop portable and scalable storage technologies for bioinformatics data, allowing parallel computing at the multicore and cluster levels. C++ library. Download, R packages. gdsfmt, an R interface for the CoreArray library. zhengxwen/.

The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, like single- nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are also supported with relatively efficient random. This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than. 23 Dec node. an object of class (a GDS node), or (a GDS file). path. the path specifying a GDS node with '/' as a separator. index. a numeric vector or characters, specifying the path; it is applicable if path=NULL. silent. if TRUE, return NULL if the specified node does not exist.

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